SNP Report
Name | rs11102689   dbSNP |
---|---|
Location | chr:1,114417034 |
Allele | T/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858017 | 0.80[EUR][1000 genomes] |
rs10858019 | 0.80[EUR][1000 genomes] |
rs10858021 | 0.82[EUR][1000 genomes] |
rs11102691 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs12044534 | 0.80[EUR][1000 genomes] |
rs12061482 | 0.80[EUR][1000 genomes] |
rs12063216 | 0.80[EUR][1000 genomes] |
rs1217376 | 0.81[EUR][1000 genomes] |
rs1217377 | 0.82[EUR][1000 genomes] |
rs1217380 | 0.82[EUR][1000 genomes] |
rs1217388 | 0.84[EUR][1000 genomes] |
rs1217389 | 0.84[EUR][1000 genomes] |
rs1217395 | 0.84[EUR][1000 genomes] |
rs1217407 | 0.85[EUR][1000 genomes] |
rs1217410 | 0.85[EUR][1000 genomes] |
rs1217412 | 0.83[EUR][1000 genomes] |
rs1217421 | 0.85[EUR][1000 genomes] |
rs1230678 | 0.80[EUR][1000 genomes] |
rs1230679 | 0.80[EUR][1000 genomes] |
rs1230685 | 0.80[EUR][1000 genomes] |
rs12566340 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1599971 | 0.84[EUR][1000 genomes] |
rs1775754 | 0.84[EUR][1000 genomes] |
rs2488458 | 0.85[EUR][1000 genomes] |
rs2797409 | 0.80[EUR][1000 genomes] |
rs2797412 | 0.80[EUR][1000 genomes] |
rs4565712 | 0.80[EUR][1000 genomes] |
rs6537795 | 0.80[EUR][1000 genomes] |
rs7529353 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
PTPN22 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
HIPK1 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
AP4B1-AS1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014