SNP Report

Basic Infomation

Name	rs1230683 dbSNP
Location	chr:1,114293247
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10858017	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10858018	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10858019	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10858021	0.83[EUR][1000 genomes]
rs11102669	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1146182	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1146187	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12041547	0.82[EUR][1000 genomes]
rs12044534	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12061482	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12063216	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217210	0.83[EUR][1000 genomes]
rs1217376	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217377	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217380	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217388	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217389	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217395	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217396	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1217407	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217410	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217412	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217413	0.80[EUR][1000 genomes]
rs1217421	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1230638	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1230639	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1230640	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230645	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230647	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230649	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1230655	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1230658	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1230659	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1230671	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1230678	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230679	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1230685	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1237682	0.81[EUR][1000 genomes]
rs12566340	0.82[EUR][1000 genomes]
rs1599971	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1743605	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1775754	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1777237	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1777238	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1777241	0.83[EUR][1000 genomes]
rs1935838	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1936398	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1981319	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2093436	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295853	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2359167	0.82[EUR][1000 genomes]
rs2488458	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2636002	0.83[AMR][1000 genomes]
rs2636013	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2636014	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2797408	0.90[EUR][1000 genomes]
rs2797409	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2797412	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2798135	0.81[EUR][1000 genomes]
rs2798138	0.81[EUR][1000 genomes]
rs4145859	0.82[EUR][1000 genomes]
rs4423005	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4565712	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4600045	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4838997	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61817589	0.82[EUR][1000 genomes]
rs6537792	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6537795	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6663679	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6698586	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7526209	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7529353	0.83[EUR][1000 genomes]
rs7553188	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PHTF1	Distal transcriptional regulation
PHTF1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)