SNP Report

Basic Infomation

Name	rs7526209 dbSNP
Location	chr:1,114276725
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10858017	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10858018	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858019	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858021	0.89[ASN][1000 genomes]
rs12041547	0.87[ASN][1000 genomes]
rs12044534	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12061482	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12063216	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217376	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217377	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217380	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217386	0.87[ASN][1000 genomes]
rs1217388	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217389	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217395	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217396	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217407	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217410	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217412	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217413	0.85[ASN][1000 genomes]
rs1217416	0.85[ASN][1000 genomes]
rs1217421	0.91[ASN][1000 genomes]
rs1230637	0.89[ASN][1000 genomes]
rs1230638	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230639	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230640	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230642	0.87[ASN][1000 genomes]
rs1230645	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230646	0.89[ASN][1000 genomes]
rs1230647	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230649	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1230678	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1230679	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230683	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1230685	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1237682	0.81[ASN][1000 genomes]
rs12760067	0.82[ASN][1000 genomes]
rs1599971	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1775754	0.90[ASN][1000 genomes]
rs1935838	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1936398	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1981319	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093436	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2243471	0.84[ASN][1000 genomes]
rs2295853	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2359167	0.88[ASN][1000 genomes]
rs2488458	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2636013	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2636014	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2797408	0.84[EUR][1000 genomes]
rs2797409	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797412	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4145859	0.87[ASN][1000 genomes]
rs4423005	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4565712	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4600045	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838998	0.86[ASN][1000 genomes]
rs61817589	0.89[ASN][1000 genomes]
rs6537795	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6663679	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6698586	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7553188	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429730	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PHTF1	Distal transcriptional regulation
PHTF1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)