SNP Report
Name | rs1230682   dbSNP |
---|---|
Location | chr:1,114293526 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858016 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10858017 | 0.83[AFR][1000 genomes] |
rs10858019 | 0.85[AFR][1000 genomes] |
rs1111695 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12063216 | 0.81[AFR][1000 genomes] |
rs1217378 | 0.97[ASN][1000 genomes] |
rs1217379 | 0.96[ASN][1000 genomes] |
rs1217385 | 0.80[ASN][1000 genomes] |
rs1217405 | 0.95[ASN][1000 genomes] |
rs1217406 | 0.95[ASN][1000 genomes] |
rs1217409 | 0.94[ASN][1000 genomes] |
rs1217411 | 0.97[ASN][1000 genomes] |
rs1217418 | 0.94[ASN][1000 genomes] |
rs1217419 | 0.94[ASN][1000 genomes] |
rs1217420 | 0.94[ASN][1000 genomes] |
rs1230678 | 0.83[AFR][1000 genomes] |
rs1230680 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs1230685 | 0.83[AFR][1000 genomes] |
rs1230686 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1235005 | 0.80[ASN][1000 genomes] |
rs1310182 | 0.97[ASN][1000 genomes] |
rs1539437 | 1.00[ASN][1000 genomes] |
rs2146019 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2185971 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2273758 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2476600 | 0.97[ASN][1000 genomes] |
rs2476604 | 0.91[ASN][1000 genomes] |
rs2797412 | 0.83[AFR][1000 genomes] |
rs2797414 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2797416 | 0.97[ASN][1000 genomes] |
rs3789598 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3789600 | 1.00[ASN][1000 genomes] |
rs4565712 | 0.86[AFR][1000 genomes] |
rs4991898 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6537798 | 0.96[ASN][1000 genomes] |
rs6665194 | 0.80[ASN][1000 genomes] |
rs6672018 | 0.81[ASN][1000 genomes] |
rs7555634 | 0.97[ASN][1000 genomes] |
rs7556622 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PHTF1 | Distal transcriptional regulation |
PHTF1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014