SNP Report
Name | rs2185971   dbSNP |
---|---|
Location | chr:1,114220305 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858016 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1111695 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1113523 | 0.84[LWK][hapmap];0.94[YRI][hapmap] |
rs12061482 | 0.81[ASW][hapmap] |
rs1217204 | 0.94[YRI][hapmap] |
rs1217211 | 0.81[YRI][hapmap] |
rs1217226 | 0.81[ASW][hapmap];0.84[LWK][hapmap];0.94[YRI][hapmap] |
rs1217227 | 0.81[ASW][hapmap];0.83[LWK][hapmap];0.94[YRI][hapmap] |
rs1217228 | 0.81[ASW][hapmap];0.83[LWK][hapmap];0.94[YRI][hapmap] |
rs1217236 | 0.81[ASW][hapmap];0.80[LWK][hapmap];0.88[YRI][hapmap] |
rs1217379 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap] |
rs1217385 | 0.90[CHD][hapmap];0.95[GIH][hapmap] |
rs1217406 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.81[TSI][hapmap] |
rs1217418 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap] |
rs1217419 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap] |
rs1230682 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1230686 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs1235005 | 0.95[CHD][hapmap];0.97[GIH][hapmap] |
rs1777238 | 0.81[AFR][1000 genomes] |
rs1777241 | 0.81[ASW][hapmap] |
rs1936398 | 0.81[ASW][hapmap] |
rs1981319 | 0.81[ASW][hapmap] |
rs2146019 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2273758 | 0.83[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2295853 | 0.81[ASW][hapmap] |
rs2476600 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.83[TSI][hapmap] |
rs2797414 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2797416 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap] |
rs3789598 | 1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes] |
rs3789600 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap] |
rs4600045 | 0.81[ASW][hapmap] |
rs6537798 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap] |
rs6665194 | 0.90[CHD][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap] |
rs6672018 | 0.83[ASW][hapmap];0.82[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap] |
rs6698586 | 0.81[ASW][hapmap] |
rs7555634 | 0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap] |
rs7556622 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014