SNP Report
Basic Infomation
| Name | rs10858016 dbSNP |
|---|---|
| Location | chr:1,114269977 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1111695 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12061482 | 0.91[AFR][1000 genomes] |
| rs1217378 | 0.87[ASN][1000 genomes] |
| rs1217379 | 0.85[ASN][1000 genomes] |
| rs1217405 | 0.84[ASN][1000 genomes] |
| rs1217406 | 0.84[ASN][1000 genomes] |
| rs1217409 | 0.83[ASN][1000 genomes] |
| rs1217411 | 0.87[ASN][1000 genomes] |
| rs1217418 | 0.83[ASN][1000 genomes] |
| rs1217419 | 0.83[ASN][1000 genomes] |
| rs1217420 | 0.83[ASN][1000 genomes] |
| rs1230680 | 0.84[AMR][1000 genomes] |
| rs1230682 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1230686 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1310182 | 0.87[ASN][1000 genomes] |
| rs1539437 | 0.89[ASN][1000 genomes] |
| rs1936398 | 0.94[AFR][1000 genomes] |
| rs1981319 | 0.94[AFR][1000 genomes] |
| rs2146019 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2185971 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2273758 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2476600 | 0.87[ASN][1000 genomes] |
| rs2476604 | 0.81[ASN][1000 genomes] |
| rs2797414 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2797416 | 0.87[ASN][1000 genomes] |
| rs3789598 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3789600 | 0.89[ASN][1000 genomes] |
| rs4423005 | 0.94[AFR][1000 genomes] |
| rs4600045 | 0.94[AFR][1000 genomes] |
| rs4991898 | 0.85[ASN][1000 genomes] |
| rs6537795 | 0.91[AFR][1000 genomes] |
| rs6537798 | 0.85[ASN][1000 genomes] |
| rs6663679 | 0.94[AFR][1000 genomes] |
| rs6698586 | 0.94[AFR][1000 genomes] |
| rs7553188 | 0.94[AFR][1000 genomes] |
| rs7555634 | 0.87[ASN][1000 genomes] |
| rs7556622 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014