SNP Report
Basic Infomation
| Name | rs1217411 dbSNP |
|---|---|
| Location | chr:1,114356125 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858016 | 0.87[ASN][1000 genomes] |
| rs1111695 | 0.87[ASN][1000 genomes] |
| rs1217375 | 0.82[AFR][1000 genomes] |
| rs1217378 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1217379 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1217385 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1217404 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1217405 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217406 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217409 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217418 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217419 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217420 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1230682 | 0.97[ASN][1000 genomes] |
| rs1230686 | 0.97[ASN][1000 genomes] |
| rs1235005 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1310182 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1539437 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2273758 | 0.93[ASN][1000 genomes] |
| rs2476599 | 0.82[AFR][1000 genomes] |
| rs2476600 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2476604 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2797414 | 0.97[ASN][1000 genomes] |
| rs2797416 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3789598 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3789600 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4991898 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6537798 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6665194 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6672018 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7555634 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7556622 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RSBN1 | Proximal transcriptional regulation |
| SLC16A1 | Distal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| AP4B1 | Distal transcriptional regulation |
| DCLRE1B | Distal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| TRIM33 | Distal transcriptional regulation |
| PARD6B | Distal transcriptional regulation |
| ENSG00000231128 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014