SNP Report
Name | rs1235005   dbSNP |
---|---|
Location | chr:1,114417437 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1111695 | 0.95[CHD][hapmap];0.97[GIH][hapmap] |
rs1217378 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1217379 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1217385 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217404 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1217405 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1217406 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1217409 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1217411 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1217414 | 0.94[LWK][hapmap];0.87[YRI][hapmap] |
rs1217418 | 0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1217419 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1217420 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1230682 | 0.80[ASN][1000 genomes] |
rs1230686 | 0.80[ASN][1000 genomes] |
rs1310182 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1539437 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2185971 | 0.95[CHD][hapmap];0.97[GIH][hapmap] |
rs2273758 | 1.00[CHD][hapmap];0.97[GIH][hapmap] |
rs2476600 | 0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2476604 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2797414 | 1.00[CHD][hapmap];0.97[GIH][hapmap];0.80[ASN][1000 genomes] |
rs2797416 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3789598 | 1.00[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes] |
rs3789600 | 0.82[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs4991898 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6537798 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6665194 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6672018 | 0.82[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes] |
rs7555634 | 0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
PTPN22 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
HIPK1 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
AP4B1-AS1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL related gene | Source |
---|---|
CEBPB | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014