SNP Report
Name | rs3789598   dbSNP |
---|---|
Location | chr:1,114318727 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858016 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1111695 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217375 | 0.91[YRI][hapmap] |
rs1217378 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1217379 | 0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1217385 | 0.95[CHD][hapmap];0.95[GIH][hapmap];0.92[LWK][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes] |
rs1217405 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1217406 | 0.81[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1217408 | 0.91[YRI][hapmap] |
rs1217409 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1217411 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1217414 | 0.86[ASW][hapmap];0.97[LWK][hapmap];0.91[YRI][hapmap] |
rs1217418 | 0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1217419 | 0.81[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1217420 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1230682 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1230686 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1235005 | 1.00[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes] |
rs1310182 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1539437 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1935836 | 0.87[YRI][hapmap] |
rs1970559 | 0.83[YRI][hapmap] |
rs2146019 | 0.90[EUR][1000 genomes] |
rs2185971 | 1.00[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes] |
rs2273758 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2476599 | 0.91[YRI][hapmap] |
rs2476600 | 0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2476602 | 0.91[YRI][hapmap] |
rs2476604 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2797414 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2797416 | 0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3789600 | 0.81[ASW][hapmap];0.82[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4991898 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6537798 | 0.81[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6665194 | 0.95[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes] |
rs6672018 | 0.82[CEU][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7555634 | 0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7556622 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PHTF1 | Distal transcriptional regulation |
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
RSBN1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014