SNP Report
Name | rs7556622   dbSNP |
---|---|
Location | chr:1,114256379 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858016 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1111695 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217378 | 0.87[ASN][1000 genomes] |
rs1217379 | 0.85[ASN][1000 genomes] |
rs1217405 | 0.84[ASN][1000 genomes] |
rs1217406 | 0.84[ASN][1000 genomes] |
rs1217409 | 0.83[ASN][1000 genomes] |
rs1217411 | 0.87[ASN][1000 genomes] |
rs1217418 | 0.83[ASN][1000 genomes] |
rs1217419 | 0.83[ASN][1000 genomes] |
rs1217420 | 0.83[ASN][1000 genomes] |
rs1230682 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1230684 | 0.80[AFR][1000 genomes] |
rs1230686 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1310182 | 0.87[ASN][1000 genomes] |
rs1539437 | 0.89[ASN][1000 genomes] |
rs1777238 | 0.83[AFR][1000 genomes] |
rs2146019 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2185971 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2273758 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2476600 | 0.87[ASN][1000 genomes] |
rs2476604 | 0.81[ASN][1000 genomes] |
rs2797414 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2797416 | 0.87[ASN][1000 genomes] |
rs2798135 | 0.81[AFR][1000 genomes] |
rs3789598 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs3789600 | 0.89[ASN][1000 genomes] |
rs4991898 | 0.85[ASN][1000 genomes] |
rs6537798 | 0.85[ASN][1000 genomes] |
rs7555634 | 0.87[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PHTF1 | Proximal transcriptional regulation |
PHTF1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014