SNP Report
Name | rs2476599   dbSNP |
---|---|
Location | chr:1,114363459 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858015 | 0.89[ASN][1000 genomes] |
rs11102678 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1146183 | 0.81[CEU][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap] |
rs1146184 | 0.81[CEU][hapmap] |
rs1146185 | 0.81[ASW][hapmap];0.94[GIH][hapmap] |
rs12144309 | 0.86[GIH][hapmap] |
rs1217375 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1217378 | 0.84[AFR][1000 genomes] |
rs1217379 | 0.93[LWK][hapmap];0.83[YRI][hapmap] |
rs1217382 | 0.90[JPT][hapmap] |
rs1217393 | 0.91[JPT][hapmap] |
rs1217397 | 0.90[JPT][hapmap] |
rs1217401 | 0.90[JPT][hapmap] |
rs1217403 | 0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1217405 | 0.89[AFR][1000 genomes] |
rs1217406 | 0.87[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
rs1217408 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217411 | 0.82[AFR][1000 genomes] |
rs1217414 | 0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1217417 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1217418 | 0.81[ASW][hapmap];0.97[LWK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes] |
rs1217419 | 0.87[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
rs1217420 | 0.82[AFR][1000 genomes] |
rs1217423 | 0.82[JPT][hapmap] |
rs1230673 | 0.87[ASW][hapmap];0.81[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap] |
rs1230681 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs1230684 | 1.00[ASN][1000 genomes] |
rs1310182 | 0.91[AFR][1000 genomes] |
rs13524 | 0.93[ASW][hapmap];0.81[CEU][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap] |
rs1624335 | 0.94[ASW][hapmap];0.81[CEU][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.80[TSI][hapmap] |
rs1743594 | 0.94[ASW][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.80[TSI][hapmap] |
rs1746857 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1746860 | 0.90[JPT][hapmap] |
rs1935836 | 0.81[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1970559 | 1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2040041 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2185827 | 0.94[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2476600 | 0.93[LWK][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
rs2476602 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2476604 | 0.93[AFR][1000 genomes] |
rs2636000 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2636003 | 0.87[ASW][hapmap];0.81[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap] |
rs2797416 | 0.93[LWK][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
rs3789597 | 0.86[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes] |
rs3789598 | 0.91[YRI][hapmap] |
rs3789600 | 0.87[ASW][hapmap];0.95[LWK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes] |
rs4991898 | 0.87[AFR][1000 genomes] |
rs6537798 | 0.87[ASW][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes] |
rs7555634 | 0.93[LWK][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes] |
rs971173 | 0.90[JPT][hapmap] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
ENSG00000231128 | Proximal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
ENSG00000231128 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014