SNP Report
Basic Infomation
| Name | rs1217417 dbSNP |
|---|---|
| Location | chr:1,114400904 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102678 | 0.84[ASN][1000 genomes] |
| rs1217375 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1217403 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217408 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1217414 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1230681 | 0.88[ASN][1000 genomes] |
| rs1230684 | 0.84[ASN][1000 genomes] |
| rs1746857 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1935836 | 0.84[ASN][1000 genomes] |
| rs1970559 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2040041 | 0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2185827 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2476599 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2476602 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2636000 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AP4B1 | Distal transcriptional regulation |
| DCLRE1B | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| AP4B1-AS1 | RNA binding protein mediated regulation |
| PTPN22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014