SNP Report
Name | rs1746860   dbSNP |
---|---|
Location | chr:1,114429340 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102678 | 0.90[JPT][hapmap] |
rs11102695 | 0.86[CEU][hapmap] |
rs1217375 | 0.90[JPT][hapmap];0.82[MEX][hapmap] |
rs1217382 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217393 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217397 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1217400 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217401 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217403 | 0.90[JPT][hapmap] |
rs1217408 | 0.90[JPT][hapmap] |
rs1217414 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
rs1217423 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1230681 | 0.90[JPT][hapmap] |
rs1310183 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1935836 | 0.90[JPT][hapmap] |
rs1970559 | 0.90[JPT][hapmap] |
rs2040041 | 0.90[JPT][hapmap] |
rs2185827 | 0.90[JPT][hapmap] |
rs2476599 | 0.90[JPT][hapmap] |
rs2476602 | 0.90[JPT][hapmap];0.82[MEX][hapmap] |
rs3789597 | 0.90[JPT][hapmap] |
rs971173 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
HIPK1 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
AP4B1-AS1 | RNA binding protein mediated regulation |
BCL2L15 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014