SNP Report
Basic Infomation
| Name | rs6704188 dbSNP |
|---|---|
| Location | chr:1,114108711 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 110)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745339 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs10858000 | 0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs10858001 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10858002 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10858005 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10858007 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs10858008 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.98[ASN][1000 genomes] |
| rs10858011 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs10858017 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs11102648 | 0.96[ASN][1000 genomes] |
| rs11102649 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11102651 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11102652 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs11102653 | 0.98[ASN][1000 genomes] |
| rs11102654 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11102657 | 0.90[ASN][1000 genomes] |
| rs11102658 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11102661 | 0.93[ASN][1000 genomes] |
| rs11102669 | 0.92[ASN][1000 genomes] |
| rs1113523 | 0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes] |
| rs1146180 | 0.80[ASN][1000 genomes] |
| rs1146182 | 0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs1146187 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs12021513 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12035317 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs12037873 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs12039224 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12043639 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12061482 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs12074958 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs12077419 | 1.00[ASN][1000 genomes] |
| rs1217192 | 0.90[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1217193 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1217199 | 0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1217200 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs1217201 | 0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs1217203 | 0.95[ASN][1000 genomes] |
| rs1217204 | 0.82[YRI][hapmap];0.94[ASN][1000 genomes] |
| rs1217208 | 0.95[ASN][1000 genomes] |
| rs1217210 | 0.93[ASN][1000 genomes] |
| rs1217211 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1217214 | 0.93[ASN][1000 genomes] |
| rs1217215 | 0.95[ASN][1000 genomes] |
| rs1217221 | 0.87[ASN][1000 genomes] |
| rs1217223 | 0.95[ASN][1000 genomes] |
| rs1217226 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes] |
| rs1217227 | 0.89[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes] |
| rs1217228 | 0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes] |
| rs1217230 | 0.95[ASN][1000 genomes] |
| rs1217232 | 0.95[ASN][1000 genomes] |
| rs1217233 | 0.95[ASN][1000 genomes] |
| rs1217234 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs1217235 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1217236 | 0.90[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs1217237 | 0.95[ASN][1000 genomes] |
| rs1228280 | 0.92[ASN][1000 genomes] |
| rs1230640 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs1230645 | 0.81[CHB][hapmap] |
| rs1230647 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs1230649 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs1230655 | 0.92[ASN][1000 genomes] |
| rs1230656 | 0.86[ASN][1000 genomes] |
| rs1230658 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs1230659 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs1230661 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1230663 | 0.86[ASN][1000 genomes] |
| rs1230671 | 0.93[ASN][1000 genomes] |
| rs1230685 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs1235687 | 0.96[ASN][1000 genomes] |
| rs1235688 | 0.95[ASN][1000 genomes] |
| rs1237289 | 0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12565589 | 0.90[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs1343125 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs1343128 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs1343629 | 0.85[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs1418957 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1418958 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs17013326 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs17031716 | 0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1743605 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs1777234 | 0.93[ASN][1000 genomes] |
| rs1777237 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes] |
| rs1777238 | 0.92[ASN][1000 genomes] |
| rs1777241 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.91[ASN][1000 genomes] |
| rs1936398 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs1981319 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs2093436 | 0.81[CHB][hapmap] |
| rs2153977 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2295853 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs2359167 | 0.81[CHB][hapmap] |
| rs2636002 | 0.88[ASN][1000 genomes] |
| rs2636013 | 0.81[CHB][hapmap] |
| rs2797412 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs2798135 | 0.93[ASN][1000 genomes] |
| rs2798138 | 0.93[ASN][1000 genomes] |
| rs2884703 | 0.99[ASN][1000 genomes] |
| rs2884704 | 0.93[ASN][1000 genomes] |
| rs4259646 | 0.81[YRI][hapmap] |
| rs4274063 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4456089 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs4600045 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs4838997 | 0.92[ASN][1000 genomes] |
| rs6537790 | 0.81[YRI][hapmap] |
| rs6537792 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs6689879 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6698586 | 0.81[CHB][hapmap];0.83[MEX][hapmap] |
| rs72687973 | 0.89[ASN][1000 genomes] |
| rs72687980 | 1.00[ASN][1000 genomes] |
| rs7536360 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7554019 | 0.81[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014