SNP Report
Basic Infomation
| Name | rs1343629 dbSNP |
|---|---|
| Location | chr:1,114106209 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858002 | 0.81[LWK][hapmap] |
| rs11102658 | 0.85[AFR][1000 genomes] |
| rs1113523 | 0.81[YRI][hapmap] |
| rs12021513 | 0.84[AFR][1000 genomes] |
| rs12039224 | 0.85[AFR][1000 genomes] |
| rs1217204 | 0.82[YRI][hapmap] |
| rs1217216 | 0.91[ASN][1000 genomes] |
| rs1217222 | 0.90[ASN][1000 genomes] |
| rs1217225 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes] |
| rs1217226 | 0.82[YRI][hapmap] |
| rs1217227 | 0.82[YRI][hapmap] |
| rs1217228 | 0.82[YRI][hapmap] |
| rs1217231 | 0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1418957 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2153977 | 0.81[LWK][hapmap] |
| rs35390985 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4259646 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6537790 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6689879 | 0.88[YRI][hapmap] |
| rs6704188 | 0.85[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs7511816 | 0.82[ASN][1000 genomes] |
| rs7522138 | 0.84[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7554019 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014