SNP Report
Basic Infomation
| Name | rs1217216 dbSNP |
|---|---|
| Location | chr:1,114146135 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1217194 | 0.83[AFR][1000 genomes] |
| rs1217202 | 0.95[AFR][1000 genomes] |
| rs1217212 | 0.98[AFR][1000 genomes] |
| rs1217222 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217224 | 0.97[AFR][1000 genomes] |
| rs1217225 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1217229 | 0.94[AFR][1000 genomes] |
| rs1217231 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1235000 | 0.95[AFR][1000 genomes] |
| rs1237290 | 0.97[AFR][1000 genomes] |
| rs1343629 | 0.91[ASN][1000 genomes] |
| rs35390985 | 0.87[ASN][1000 genomes] |
| rs4259646 | 0.91[ASN][1000 genomes] |
| rs6537790 | 0.91[ASN][1000 genomes] |
| rs7511816 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7522138 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7554019 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014