SNP Report
Name | rs7522138   dbSNP |
---|---|
Location | chr:1,114217705 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1113523 | 0.81[CHB][hapmap] |
rs1146183 | 0.86[ASW][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes] |
rs1146184 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
rs1146185 | 0.93[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs1146187 | 0.81[CHB][hapmap] |
rs1217193 | 0.81[CHB][hapmap] |
rs1217200 | 0.81[CHB][hapmap] |
rs1217211 | 0.81[CHB][hapmap] |
rs1217216 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1217222 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217225 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1217231 | 0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1230658 | 0.81[CHB][hapmap] |
rs1230659 | 0.81[CHB][hapmap] |
rs1230661 | 0.81[CHB][hapmap] |
rs1343629 | 0.84[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
rs13524 | 0.80[ASW][hapmap] |
rs1624335 | 0.81[ASW][hapmap] |
rs17031716 | 0.81[CHB][hapmap] |
rs1743594 | 0.81[ASW][hapmap] |
rs1743605 | 0.81[CHB][hapmap] |
rs1746853 | 0.92[CEU][hapmap];0.85[CHB][hapmap] |
rs1777237 | 0.81[CHB][hapmap] |
rs4259646 | 0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6537790 | 0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6537792 | 0.81[CHB][hapmap] |
rs7511816 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7554019 | 0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap] |
Symbol | Regulation type |
---|---|
MAGI3 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014