SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1113523	0.81[CHB][hapmap]
rs1146183	0.86[ASW][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs1146184	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs1146185	0.93[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1146187	0.81[CHB][hapmap]
rs1217193	0.81[CHB][hapmap]
rs1217200	0.81[CHB][hapmap]
rs1217211	0.81[CHB][hapmap]
rs1217216	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217222	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1217225	0.81[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217231	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1230658	0.81[CHB][hapmap]
rs1230659	0.81[CHB][hapmap]
rs1230661	0.81[CHB][hapmap]
rs1343629	0.84[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13524	0.80[ASW][hapmap]
rs1624335	0.81[ASW][hapmap]
rs17031716	0.81[CHB][hapmap]
rs1743594	0.81[ASW][hapmap]
rs1743605	0.81[CHB][hapmap]
rs1746853	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1777237	0.81[CHB][hapmap]
rs4259646	0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6537790	0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6537792	0.81[CHB][hapmap]
rs7511816	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554019	0.84[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
MAGI3	Distal transcriptional regulation
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 6)