SNP Report
Basic Infomation
| Name | rs1746853 dbSNP |
|---|---|
| Location | chr:1,114383097 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858017 | 0.81[CHB][hapmap] |
| rs10858018 | 0.82[CHB][hapmap] |
| rs12041547 | 0.82[CHB][hapmap] |
| rs12061482 | 0.81[CHB][hapmap] |
| rs1217380 | 0.81[CHB][hapmap] |
| rs1217388 | 0.81[CHB][hapmap] |
| rs1217389 | 0.81[CHB][hapmap] |
| rs1217395 | 0.81[CHB][hapmap] |
| rs1217396 | 0.81[CHB][hapmap] |
| rs1217410 | 0.81[CHB][hapmap] |
| rs1217412 | 0.81[CHB][hapmap] |
| rs1217413 | 0.81[CHB][hapmap] |
| rs1230640 | 0.81[CHB][hapmap] |
| rs1230645 | 0.81[CHB][hapmap] |
| rs1230647 | 0.81[CHB][hapmap] |
| rs1230649 | 0.81[CHB][hapmap] |
| rs1230685 | 0.81[CHB][hapmap] |
| rs1237682 | 0.82[CHB][hapmap] |
| rs1936398 | 0.81[CHB][hapmap] |
| rs1981319 | 0.81[CHB][hapmap] |
| rs2093436 | 0.82[CHB][hapmap] |
| rs2295853 | 0.81[CHB][hapmap] |
| rs2359167 | 0.81[CHB][hapmap] |
| rs2488458 | 0.81[CHB][hapmap] |
| rs2636013 | 0.82[CHB][hapmap] |
| rs2797409 | 0.81[CHB][hapmap] |
| rs2797412 | 0.81[CHB][hapmap] |
| rs4145859 | 0.82[CHB][hapmap] |
| rs4600045 | 0.81[CHB][hapmap] |
| rs6698586 | 0.81[CHB][hapmap] |
| rs7522138 | 0.92[CEU][hapmap];0.85[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DCLRE1B | Distal transcriptional regulation |
| PTPN22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014