SNP Report
Basic Infomation
| Name | rs1228280 dbSNP |
|---|---|
| Location | chr:1,114154652 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 96)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745339 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10858000 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10858001 | 0.89[ASN][1000 genomes] |
| rs10858002 | 0.87[ASN][1000 genomes] |
| rs10858005 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10858007 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10858008 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10858011 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11102648 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11102649 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11102651 | 0.90[ASN][1000 genomes] |
| rs11102652 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11102653 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11102654 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11102657 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11102658 | 0.90[ASN][1000 genomes] |
| rs11102661 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11102669 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1113523 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1146180 | 0.82[ASN][1000 genomes] |
| rs1146182 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1146187 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12021513 | 0.92[ASN][1000 genomes] |
| rs12035317 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12037873 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12039224 | 0.92[ASN][1000 genomes] |
| rs12043639 | 0.90[ASN][1000 genomes] |
| rs12074958 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12077419 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1217192 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217193 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217199 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217200 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217201 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1217203 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1217204 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1217208 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217210 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217211 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217214 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1217215 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217221 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1217223 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217226 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217227 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217228 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1217230 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217232 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217233 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217234 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217235 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217236 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217237 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1230647 | 0.80[EUR][1000 genomes] |
| rs1230649 | 0.81[EUR][1000 genomes] |
| rs1230655 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230656 | 0.89[ASN][1000 genomes] |
| rs1230658 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230659 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230661 | 0.90[ASN][1000 genomes] |
| rs1230663 | 0.92[ASN][1000 genomes] |
| rs1230671 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1235687 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1235688 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1237289 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12565589 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1343125 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1343128 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1418957 | 0.91[ASN][1000 genomes] |
| rs1418958 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17013326 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17031716 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1743605 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1777234 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1777237 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1777238 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1777241 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1936398 | 0.81[EUR][1000 genomes] |
| rs2153977 | 0.90[ASN][1000 genomes] |
| rs2295853 | 0.80[EUR][1000 genomes] |
| rs2636002 | 0.92[ASN][1000 genomes] |
| rs2798135 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2798138 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2884703 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2884704 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4274063 | 0.90[ASN][1000 genomes] |
| rs4456089 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4838997 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61820160 | 0.85[ASN][1000 genomes] |
| rs6537792 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6689879 | 0.92[ASN][1000 genomes] |
| rs6698586 | 0.80[EUR][1000 genomes] |
| rs6704188 | 0.92[ASN][1000 genomes] |
| rs72687973 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72687980 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7536360 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014