SNP Report
Basic Infomation
| Name | rs1217391 dbSNP |
|---|---|
| Location | chr:1,114434176 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745340 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10776775 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10858022 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11582409 | 0.85[YRI][hapmap] |
| rs11584821 | 0.85[YRI][hapmap] |
| rs1217382 | 0.86[YRI][hapmap] |
| rs1217392 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17464525 | 1.00[YRI][hapmap] |
| rs17510162 | 0.85[YRI][hapmap] |
| rs3765598 | 0.85[YRI][hapmap] |
| rs3789613 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs3811021 | 0.85[YRI][hapmap] |
| rs3827733 | 0.85[YRI][hapmap] |
| rs6661817 | 0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6700802 | 0.85[YRI][hapmap] |
| rs7523862 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap] |
| rs7524200 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BCL2L15 | Proximal transcriptional regulation |
| BCL2L15 | Distal transcriptional regulation |
| AP4B1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014