SNP Report
Name | rs17510162   dbSNP |
---|---|
Location | chr:1,114413731 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10745340 | 0.85[YRI][hapmap] |
rs10776775 | 0.85[YRI][hapmap] |
rs10858022 | 0.85[YRI][hapmap] |
rs11582409 | 0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11584821 | 1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1217391 | 0.85[YRI][hapmap] |
rs1217392 | 0.85[YRI][hapmap] |
rs17463292 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17464525 | 0.85[YRI][hapmap] |
rs17509844 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3195954 | 0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs34122108 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs35173468 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3761935 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3765598 | 0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3789604 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3789608 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3789613 | 0.85[YRI][hapmap] |
rs3811021 | 0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3827733 | 0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs4393155 | 0.80[ASN][1000 genomes] |
rs4839000 | 0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
rs4839346 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs55646484 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs55940960 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs55951516 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6537796 | 0.85[YRI][hapmap] |
rs6658523 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6661817 | 0.85[YRI][hapmap] |
rs6700802 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs7523862 | 0.85[YRI][hapmap] |
rs7524200 | 0.82[YRI][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000258704 | Distal transcriptional regulation |
SRP54 | Distal transcriptional regulation |
AP4B1-AS1 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014