SNP Report
Basic Infomation
| Name | rs17359378 dbSNP |
|---|---|
| Location | chr:1,114216709 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12144215 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1419231 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17031795 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17274627 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17359281 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17359468 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2146018 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3761934 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs41352847 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4393155 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4589108 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4838993 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4838994 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4839000 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4839327 | 0.82[ASN][1000 genomes] |
| rs4839329 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4839330 | 0.89[ASN][1000 genomes] |
| rs4839331 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4839332 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4839333 | 0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4839341 | 0.83[EUR][1000 genomes] |
| rs6678422 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6699022 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014