SNP Report
Basic Infomation
| Name | rs4839329 dbSNP |
|---|---|
| Location | chr:1,114135705 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12144215 | 0.87[ASN][1000 genomes] |
| rs1419231 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17274627 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17359281 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17359378 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17359468 | 0.80[ASN][1000 genomes] |
| rs17461918 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17508449 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2146018 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3761934 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs41352847 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4838993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4838994 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4839327 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4839330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4839331 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4839332 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4839333 | 0.90[ASN][1000 genomes] |
| rs6678422 | 0.92[ASN][1000 genomes] |
| rs6699022 | 0.92[ASN][1000 genomes] |
| rs7514649 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014