SNP Report
Name | rs17508449   dbSNP |
---|---|
Location | chr:1,114085145 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1419231 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17274627 | 0.87[CHB][hapmap];0.92[JPT][hapmap] |
rs17359281 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes] |
rs17461918 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2146018 | 0.81[ASN][1000 genomes] |
rs3761934 | 0.81[ASN][1000 genomes] |
rs41352847 | 0.81[ASN][1000 genomes] |
rs4259646 | 0.80[CHD][hapmap] |
rs4838993 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4838994 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4839000 | 0.86[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap] |
rs4839327 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4839329 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4839330 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4839331 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4839332 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4839333 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap] |
rs6537790 | 0.80[CHD][hapmap] |
rs6678422 | 0.81[ASN][1000 genomes] |
rs6699022 | 0.96[ASN][1000 genomes] |
rs7514649 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7554019 | 0.80[CHD][hapmap] |
Symbol | Regulation type |
---|---|
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014