SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1419231	0.80[ASN][1000 genomes]
rs17031795	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17274627	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17359281	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17359378	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2146018	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3761934	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41352847	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4393155	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4589108	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4838993	0.80[ASN][1000 genomes]
rs4838994	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4839000	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4839329	0.80[ASN][1000 genomes]
rs4839331	0.82[ASN][1000 genomes]
rs4839332	0.80[ASN][1000 genomes]
rs4839333	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4839341	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6678422	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000232450	Proximal transcriptional regulation
PHTF1	Distal transcriptional regulation
PHTF1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)