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rVarBase
SNP Report
Basic Infomation
Name
rs28831807  
dbSNP
Location
chr:1,114295052
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11102678
0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1230681
0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1230684
0.80[AMR][1000 genomes]
rs1935836
0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3789597
0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RSBN1
Distal transcriptional regulation
ENSG00000231128
Distal transcriptional regulation
PHTF1
Distal transcriptional regulation
PHTF1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)