SNP Report

Basic Infomation

Name	rs11169058 dbSNP
Location	chr:12,49924637
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 88)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160947	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10161131	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10506284	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10506285	1.00[JPT][hapmap]
rs10783314	1.00[YRI][hapmap]
rs10875955	0.82[AMR][1000 genomes]
rs11168981	1.00[JPT][hapmap]
rs11169005	0.94[ASW][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs11169008	1.00[YRI][hapmap]
rs11169015	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169016	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169017	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11169027	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11169043	0.83[AFR][1000 genomes]
rs11169045	0.82[AFR][1000 genomes]
rs11169048	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169049	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169063	0.94[ASW][hapmap];0.91[CEU][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs11611743	0.83[EUR][1000 genomes]
rs11834161	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12296440	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299282	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12300817	1.00[ASN][1000 genomes]
rs12301632	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12305716	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12306118	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12306212	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12306430	1.00[CHD][hapmap]
rs12306481	1.00[CHD][hapmap]
rs12306645	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12306866	1.00[JPT][hapmap]
rs12309053	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12310129	1.00[JPT][hapmap]
rs12314428	1.00[ASN][1000 genomes]
rs12315996	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316170	1.00[ASN][1000 genomes]
rs12318633	1.00[ASN][1000 genomes]
rs12320284	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12322561	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12322571	1.00[ASN][1000 genomes]
rs12581343	1.00[CHB][hapmap]
rs1317131	1.00[CHD][hapmap]
rs17123696	1.00[JPT][hapmap]
rs17123751	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17123764	1.00[CHD][hapmap]
rs17123790	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17123865	1.00[CHB][hapmap]
rs17197593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1874910	1.00[JPT][hapmap]
rs2270741	1.00[JPT][hapmap]
rs2272478	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144469	1.00[JPT][hapmap]
rs4569075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4641552	1.00[CHD][hapmap]
rs4898506	0.85[YRI][hapmap]
rs57200170	1.00[ASN][1000 genomes]
rs57601151	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58125498	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60808917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap]
rs6580709	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs6580716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7132684	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7133398	0.88[ASW][hapmap];0.90[GIH][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap]
rs7139061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7294648	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294973	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7295162	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7295556	0.88[ASW][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs7309997	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73297209	0.83[EUR][1000 genomes]
rs73301240	1.00[ASN][1000 genomes]
rs73301259	1.00[ASN][1000 genomes]
rs7342365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7955541	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs7962951	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7963954	0.84[GIH][hapmap]
rs7965658	0.87[GIH][hapmap]
rs7969010	0.83[EUR][1000 genomes]
rs7969099	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs7974420	0.94[ASW][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap]
rs7975712	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7976165	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7980731	0.94[ASW][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap]
rs9919739	0.83[ASN][1000 genomes]
rs9919740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9919807	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258101	Distal transcriptional regulation
TUBA1C	Distal transcriptional regulation
KCNH3	Distal transcriptional regulation
DNAJC22	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)