SNP Report

Basic Infomation

Name	rs11169049 dbSNP
Location	chr:12,49895496
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160947	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10161131	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10783314	0.82[AMR][1000 genomes]
rs11169005	0.82[AMR][1000 genomes]
rs11169008	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11169015	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169016	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169017	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169027	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11169043	0.84[AFR][1000 genomes]
rs11169045	0.83[AFR][1000 genomes]
rs11169048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169058	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169059	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611743	0.92[EUR][1000 genomes]
rs12296440	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299282	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12300817	1.00[ASN][1000 genomes]
rs12301632	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12305716	1.00[ASN][1000 genomes]
rs12306118	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12306212	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12306645	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12309053	1.00[ASN][1000 genomes]
rs12314428	1.00[ASN][1000 genomes]
rs12315033	0.83[EUR][1000 genomes]
rs12315996	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316170	1.00[ASN][1000 genomes]
rs12318633	1.00[ASN][1000 genomes]
rs12320284	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12322561	1.00[ASN][1000 genomes]
rs12322571	1.00[ASN][1000 genomes]
rs2272478	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57200170	1.00[ASN][1000 genomes]
rs57601151	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58125498	0.81[AFR][1000 genomes]
rs60808917	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	0.89[EUR][1000 genomes]
rs6580709	0.90[EUR][1000 genomes]
rs6580711	0.89[EUR][1000 genomes]
rs7132684	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7139061	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7294648	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294973	1.00[ASN][1000 genomes]
rs73297209	0.92[EUR][1000 genomes]
rs73301240	1.00[ASN][1000 genomes]
rs73301259	1.00[ASN][1000 genomes]
rs7955541	0.90[EUR][1000 genomes]
rs7962951	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7969010	0.92[EUR][1000 genomes]
rs7969099	0.92[EUR][1000 genomes]
rs7975712	0.85[AFR][1000 genomes]
rs7976165	1.00[ASN][1000 genomes]
rs9919739	0.83[ASN][1000 genomes]
rs9919740	0.83[ASN][1000 genomes]
rs9919807	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPATS2	Distal transcriptional regulation
SPATS2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)