SNP Report

Basic Infomation

Name	rs10783314 dbSNP
Location	chr:12,49814640
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 69)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160947	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10161131	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10875955	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875958	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169005	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169008	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169014	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169015	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11169016	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11169017	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11169027	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11169043	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169045	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11169048	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169049	0.82[AMR][1000 genomes]
rs11169058	1.00[YRI][hapmap]
rs11169059	0.85[YRI][hapmap]
rs11169063	0.95[YRI][hapmap]
rs11169073	1.00[CHB][hapmap]
rs11169081	1.00[CHB][hapmap]
rs11169082	1.00[CHB][hapmap]
rs11611743	0.87[EUR][1000 genomes]
rs11615710	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11833411	1.00[CHB][hapmap]
rs12296440	1.00[YRI][hapmap]
rs12299282	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12301632	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12306118	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12306212	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12306645	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12315996	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12320284	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12321819	1.00[CHB][hapmap]
rs17123808	1.00[CHB][hapmap]
rs2272478	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2278069	1.00[CHB][hapmap]
rs2303305	1.00[CHB][hapmap]
rs3815832	1.00[CHB][hapmap]
rs3887728	1.00[CHB][hapmap]
rs4898506	0.85[YRI][hapmap]
rs4993294	1.00[CHB][hapmap]
rs57601151	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6580707	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs6580708	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6580709	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs6580711	0.84[EUR][1000 genomes]
rs6580715	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7132684	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7133398	0.93[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7139061	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7294648	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7295556	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73297209	0.87[EUR][1000 genomes]
rs7488923	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953911	1.00[CHB][hapmap]
rs7955541	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs7962951	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7965658	1.00[CHB][hapmap]
rs7969010	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs7969099	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7970059	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970241	1.00[CHB][hapmap]
rs7973389	1.00[CHB][hapmap]
rs7974420	1.00[CEU][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975599	1.00[CHB][hapmap]
rs7975712	0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs7977389	1.00[CHB][hapmap]
rs7980731	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876889	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
SPATS2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)