SNP Report
Basic Infomation
| Name | rs12299282 dbSNP |
|---|---|
| Location | chr:12,49835223 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 70)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160947 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10161131 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10506284 | 1.00[ASN][1000 genomes] |
| rs10783314 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10875955 | 0.83[AMR][1000 genomes] |
| rs10875958 | 0.83[EUR][1000 genomes] |
| rs11168988 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169005 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11169008 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11169014 | 0.83[EUR][1000 genomes] |
| rs11169015 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169016 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169017 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169043 | 0.84[EUR][1000 genomes] |
| rs11169045 | 0.83[EUR][1000 genomes] |
| rs11169048 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11169049 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11169058 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11169059 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11611743 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11615710 | 0.80[EUR][1000 genomes] |
| rs11834161 | 1.00[ASN][1000 genomes] |
| rs12296440 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12301632 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12302036 | 0.83[ASN][1000 genomes] |
| rs12306118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306645 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12315033 | 0.88[EUR][1000 genomes] |
| rs12315996 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12320284 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322319 | 1.00[ASN][1000 genomes] |
| rs2272478 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs28450055 | 1.00[ASN][1000 genomes] |
| rs57108124 | 1.00[ASN][1000 genomes] |
| rs57601151 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58095611 | 0.81[EUR][1000 genomes] |
| rs59250459 | 1.00[ASN][1000 genomes] |
| rs60808917 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs61340540 | 1.00[ASN][1000 genomes] |
| rs6580707 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580708 | 0.84[EUR][1000 genomes] |
| rs6580709 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580710 | 1.00[ASN][1000 genomes] |
| rs6580711 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580715 | 0.84[EUR][1000 genomes] |
| rs6580716 | 1.00[ASN][1000 genomes] |
| rs7132684 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7139061 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7294648 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7295162 | 1.00[ASN][1000 genomes] |
| rs7295556 | 0.84[EUR][1000 genomes] |
| rs7309997 | 0.83[ASN][1000 genomes] |
| rs73295291 | 1.00[ASN][1000 genomes] |
| rs73295300 | 1.00[ASN][1000 genomes] |
| rs73297209 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297210 | 1.00[ASN][1000 genomes] |
| rs73297243 | 1.00[ASN][1000 genomes] |
| rs7342365 | 1.00[ASN][1000 genomes] |
| rs74089066 | 1.00[ASN][1000 genomes] |
| rs7488923 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7955541 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7961032 | 0.83[ASN][1000 genomes] |
| rs7962951 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969010 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969099 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7970059 | 0.84[EUR][1000 genomes] |
| rs7974420 | 0.84[EUR][1000 genomes] |
| rs7980731 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPATS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014