SNP Report

Basic Infomation

Name	rs11169048 dbSNP
Location	chr:12,49892533
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 95)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160947	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10161131	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10506284	1.00[CHB][hapmap]
rs10783314	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10875948	1.00[CHB][hapmap]
rs11168967	1.00[CHB][hapmap]
rs11168988	0.82[EUR][1000 genomes]
rs11169005	0.94[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169008	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11169014	0.81[EUR][1000 genomes]
rs11169015	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169016	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11169017	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169027	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169043	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11169045	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11169049	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169058	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169059	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169063	0.94[ASW][hapmap];0.97[GIH][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs11611743	0.96[EUR][1000 genomes]
rs11615710	0.82[AFR][1000 genomes]
rs11830144	1.00[CHD][hapmap]
rs11834161	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11835037	1.00[CHB][hapmap]
rs11837234	1.00[CHB][hapmap]
rs12296440	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299282	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12300817	1.00[ASN][1000 genomes]
rs12301632	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12305716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12306118	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12306212	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12306645	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12309053	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12314428	1.00[ASN][1000 genomes]
rs12315033	0.87[EUR][1000 genomes]
rs12315996	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316170	1.00[ASN][1000 genomes]
rs12318618	1.00[CHB][hapmap]
rs12318633	1.00[ASN][1000 genomes]
rs12320284	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12322335	1.00[CHB][hapmap]
rs12322561	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12322571	1.00[ASN][1000 genomes]
rs12581343	1.00[CHB][hapmap]
rs12581428	1.00[CHB][hapmap]
rs17123751	1.00[CHB][hapmap]
rs17123764	1.00[CHD][hapmap]
rs17123790	1.00[CHB][hapmap]
rs17123865	1.00[CHB][hapmap]
rs17197593	1.00[CHB][hapmap]
rs2272478	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569075	1.00[CHB][hapmap]
rs4641552	1.00[CHD][hapmap]
rs4898506	0.85[YRI][hapmap]
rs57200170	1.00[ASN][1000 genomes]
rs57601151	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58125498	0.82[AFR][1000 genomes]
rs60808917	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs6580708	0.82[EUR][1000 genomes]
rs6580709	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6580711	0.92[EUR][1000 genomes]
rs6580715	0.80[EUR][1000 genomes]
rs6580716	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7132684	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7133398	0.88[ASW][hapmap];0.85[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap]
rs7139061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7294648	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294973	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7295162	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7295247	1.00[CHB][hapmap]
rs7295556	0.88[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7309997	1.00[CHB][hapmap]
rs73297209	0.96[EUR][1000 genomes]
rs73301240	1.00[ASN][1000 genomes]
rs73301259	1.00[ASN][1000 genomes]
rs7342318	1.00[CHB][hapmap]
rs7342365	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7488923	0.83[EUR][1000 genomes]
rs7955541	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs7962951	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7963954	0.87[GIH][hapmap]
rs7965658	0.90[GIH][hapmap]
rs7969010	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7969099	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7970059	0.82[EUR][1000 genomes]
rs7974420	0.94[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs7975712	0.94[ASW][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs7976165	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7980731	0.94[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs9919739	0.83[ASN][1000 genomes]
rs9919740	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9919807	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPATS2	Distal transcriptional regulation
SPATS2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)