SNP Report

Basic Infomation

Name	rs10875948 dbSNP
Location	chr:12,49708676
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 86)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10400435	0.91[CEU][hapmap]
rs10506284	1.00[CHB][hapmap]
rs10875946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168967	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11168970	1.00[ASN][1000 genomes]
rs11168971	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168975	1.00[JPT][hapmap]
rs11169016	1.00[CHB][hapmap]
rs11169048	1.00[CHB][hapmap]
rs11834161	1.00[CHB][hapmap]
rs11835037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11835303	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11837234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12301545	1.00[ASN][1000 genomes]
rs12301632	1.00[CHB][hapmap]
rs12304800	1.00[ASN][1000 genomes]
rs12305716	1.00[CHB][hapmap]
rs12306118	1.00[CHB][hapmap]
rs12310595	0.82[AMR][1000 genomes]
rs12315095	1.00[ASN][1000 genomes]
rs12315130	1.00[ASN][1000 genomes]
rs12315996	1.00[CHB][hapmap]
rs12317532	1.00[ASN][1000 genomes]
rs12318618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12322335	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12322497	0.84[AMR][1000 genomes]
rs12322506	0.84[AMR][1000 genomes]
rs12322798	1.00[ASN][1000 genomes]
rs12580931	1.00[JPT][hapmap]
rs12581343	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12581428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12582651	0.82[AMR][1000 genomes]
rs12582901	0.82[AMR][1000 genomes]
rs12822293	1.00[CEU][hapmap]
rs2070761	1.00[ASN][1000 genomes]
rs2230550	0.93[ASN][1000 genomes]
rs2236746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2272478	1.00[CHB][hapmap]
rs28543370	1.00[ASN][1000 genomes]
rs28798494	1.00[ASN][1000 genomes]
rs28823960	1.00[ASN][1000 genomes]
rs28857010	1.00[ASN][1000 genomes]
rs3088008	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs34791911	1.00[ASN][1000 genomes]
rs3847764	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs3898446	1.00[ASN][1000 genomes]
rs4243545	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4382953	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs4898502	1.00[CEU][hapmap]
rs4898504	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4898516	1.00[ASN][1000 genomes]
rs4898517	1.00[ASN][1000 genomes]
rs4898519	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs56911877	0.83[EUR][1000 genomes]
rs57451017	1.00[ASN][1000 genomes]
rs57755392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59990555	0.83[EUR][1000 genomes]
rs60174686	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61023481	1.00[ASN][1000 genomes]
rs61649357	0.87[EUR][1000 genomes]
rs6580707	1.00[CHB][hapmap]
rs6580709	1.00[CHB][hapmap]
rs6580716	1.00[CHB][hapmap]
rs7136538	1.00[ASN][1000 genomes]
rs7136945	1.00[ASN][1000 genomes]
rs7139061	1.00[CHB][hapmap]
rs7294648	1.00[CHB][hapmap]
rs7294873	1.00[ASN][1000 genomes]
rs7294973	1.00[CHB][hapmap]
rs7295162	1.00[CHB][hapmap]
rs7295247	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7309997	1.00[CHB][hapmap]
rs73309973	0.86[EUR][1000 genomes]
rs7342318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7342365	1.00[CHB][hapmap]
rs7342370	1.00[ASN][1000 genomes]
rs7342384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7397166	0.85[EUR][1000 genomes]
rs7398252	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7398257	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7955541	1.00[CHB][hapmap]
rs7962951	1.00[CHB][hapmap]
rs7969099	1.00[CHB][hapmap]
rs7976165	1.00[CHB][hapmap]
rs9919740	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
TROAP	Distal transcriptional regulation
PRPH	Distal transcriptional regulation
DNAJC22	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)