SNP Report
Basic Infomation
| Name | rs2236746 dbSNP |
|---|---|
| Location | chr:12,49691567 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 75)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506284 | 1.00[CHB][hapmap] |
| rs10875946 | 1.00[ASN][1000 genomes] |
| rs10875948 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11168967 | 0.87[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168970 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168971 | 1.00[ASN][1000 genomes] |
| rs11168972 | 1.00[ASN][1000 genomes] |
| rs11168973 | 0.93[CEU][hapmap] |
| rs11168975 | 1.00[JPT][hapmap] |
| rs11169016 | 1.00[CHB][hapmap] |
| rs11834161 | 1.00[CHB][hapmap] |
| rs11835037 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11835303 | 1.00[JPT][hapmap] |
| rs11837234 | 0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12301545 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12301632 | 1.00[CHB][hapmap] |
| rs12304800 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306118 | 1.00[CHB][hapmap] |
| rs12315095 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12315130 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12315996 | 1.00[CHB][hapmap] |
| rs12317532 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12318618 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12322335 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322783 | 0.93[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs12322798 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12580931 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap] |
| rs12581343 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12581428 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2070760 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2070761 | 1.00[ASN][1000 genomes] |
| rs2230550 | 0.93[ASN][1000 genomes] |
| rs2272478 | 1.00[CHB][hapmap] |
| rs28493849 | 0.84[EUR][1000 genomes] |
| rs28543370 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28798494 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28808573 | 0.83[AMR][1000 genomes] |
| rs28823960 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28857010 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3088008 | 1.00[JPT][hapmap] |
| rs34791911 | 1.00[ASN][1000 genomes] |
| rs3847764 | 1.00[CHB][hapmap] |
| rs3898446 | 1.00[ASN][1000 genomes] |
| rs4243545 | 1.00[JPT][hapmap] |
| rs4898516 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4898517 | 1.00[ASN][1000 genomes] |
| rs4898519 | 1.00[JPT][hapmap] |
| rs57451017 | 1.00[ASN][1000 genomes] |
| rs57755392 | 1.00[ASN][1000 genomes] |
| rs60174686 | 0.82[ASN][1000 genomes] |
| rs61023481 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580707 | 1.00[CHB][hapmap] |
| rs6580709 | 1.00[CHB][hapmap] |
| rs6580716 | 1.00[CHB][hapmap] |
| rs67309388 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7136538 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7136945 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7139061 | 1.00[CHB][hapmap] |
| rs7294648 | 1.00[CHB][hapmap] |
| rs7294873 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7294973 | 1.00[CHB][hapmap] |
| rs7295162 | 1.00[CHB][hapmap] |
| rs7295247 | 0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7309997 | 1.00[CHB][hapmap] |
| rs73112143 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7342318 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7342365 | 1.00[CHB][hapmap] |
| rs7342370 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7342384 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7398252 | 1.00[ASN][1000 genomes] |
| rs7398257 | 0.87[ASN][1000 genomes] |
| rs7955541 | 1.00[CHB][hapmap] |
| rs7962951 | 1.00[CHB][hapmap] |
| rs7969099 | 1.00[CHB][hapmap] |
| rs7976165 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| ENSG00000258232 | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258017 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| ENSG00000258334 | RNA binding protein mediated regulation |
| PRPH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014