SNP Report
Basic Infomation
| Name | rs12580931 dbSNP |
|---|---|
| Location | chr:12,49688057 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10400435 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes] |
| rs10400567 | 0.85[ASN][1000 genomes] |
| rs10875948 | 1.00[JPT][hapmap] |
| rs11168967 | 1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs11168973 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168974 | 0.92[ASN][1000 genomes] |
| rs11168975 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11168981 | 0.82[CHB][hapmap] |
| rs11835037 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs11835303 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11837234 | 1.00[JPT][hapmap] |
| rs12306866 | 0.82[CHB][hapmap] |
| rs12318618 | 1.00[JPT][hapmap] |
| rs12322335 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap] |
| rs12322783 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12581428 | 1.00[JPT][hapmap] |
| rs12822293 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs2070760 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2236746 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap] |
| rs2270741 | 0.82[CHB][hapmap] |
| rs28493849 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28691217 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3088008 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4243545 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4898504 | 0.96[ASN][1000 genomes] |
| rs4898515 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4898519 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs57241318 | 0.92[ASN][1000 genomes] |
| rs59575791 | 0.89[ASN][1000 genomes] |
| rs67309388 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68030039 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7295247 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs7299812 | 0.82[CHB][hapmap] |
| rs73112143 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73309977 | 0.89[ASN][1000 genomes] |
| rs7342318 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap] |
| rs7342384 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap] |
| rs7488343 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPH | Proximal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| ENSG00000258232 | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| ENSG00000258334 | RNA binding protein mediated regulation |
| PRPH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014