SNP Report

Basic Infomation

Name	rs28493849 dbSNP
Location	chr:12,49694626
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10400435	0.85[ASN][1000 genomes]
rs10400567	0.85[ASN][1000 genomes]
rs11168970	0.86[AFR][1000 genomes]
rs11168973	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168974	0.92[ASN][1000 genomes]
rs11168975	0.92[ASN][1000 genomes]
rs11835037	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11835303	0.89[ASN][1000 genomes]
rs12301545	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12315095	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12315130	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12317532	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12322335	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12322783	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12322798	0.85[AFR][1000 genomes]
rs12580931	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12822293	0.85[ASN][1000 genomes]
rs2070760	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236746	0.84[EUR][1000 genomes]
rs28543370	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28691217	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28798494	0.84[EUR][1000 genomes]
rs28823960	0.83[EUR][1000 genomes]
rs28857010	0.85[EUR][1000 genomes]
rs3088008	0.89[ASN][1000 genomes]
rs4243545	0.89[ASN][1000 genomes]
rs4898504	0.96[ASN][1000 genomes]
rs4898515	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4898516	0.82[EUR][1000 genomes]
rs4898519	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs57241318	0.92[ASN][1000 genomes]
rs59575791	0.89[ASN][1000 genomes]
rs61023481	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67309388	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68030039	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7136538	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7136945	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7294873	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7295247	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73112143	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309977	0.89[ASN][1000 genomes]
rs7342318	0.84[EUR][1000 genomes]
rs7342370	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7342384	0.82[EUR][1000 genomes]
rs7488343	1.00[ASN][1000 genomes]
rs7976060	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258232	Distal transcriptional regulation
SPATS2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)