SNP Report
Basic Infomation
| Name | rs3088008 dbSNP |
|---|---|
| Location | chr:12,49724955 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10400435 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10400567 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10875948 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs11168967 | 1.00[JPT][hapmap] |
| rs11168973 | 0.93[ASN][1000 genomes] |
| rs11168974 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168975 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11168981 | 0.82[CHB][hapmap] |
| rs11835037 | 1.00[JPT][hapmap] |
| rs11835303 | 0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11837234 | 1.00[JPT][hapmap] |
| rs12306866 | 0.82[CHB][hapmap] |
| rs12318618 | 1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs12322335 | 1.00[JPT][hapmap] |
| rs12580931 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs12581428 | 1.00[JPT][hapmap] |
| rs12822293 | 0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2070760 | 0.89[ASN][1000 genomes] |
| rs2236746 | 1.00[JPT][hapmap] |
| rs2270741 | 0.82[CHB][hapmap] |
| rs28493849 | 0.89[ASN][1000 genomes] |
| rs4243545 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4382953 | 0.83[CEU][hapmap] |
| rs4898502 | 1.00[CEU][hapmap];0.80[MEX][hapmap] |
| rs4898504 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4898519 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57241318 | 0.96[ASN][1000 genomes] |
| rs59575791 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67309388 | 0.89[ASN][1000 genomes] |
| rs7295247 | 1.00[JPT][hapmap] |
| rs7299812 | 0.82[CHB][hapmap] |
| rs73112143 | 0.89[ASN][1000 genomes] |
| rs73309977 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7342318 | 1.00[JPT][hapmap] |
| rs7342384 | 1.00[JPT][hapmap] |
| rs7488343 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNH3 | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| TROAP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014