SNP Report
Basic Infomation
| Name | rs11837234 dbSNP |
|---|---|
| Location | chr:12,49695878 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 69)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506284 | 1.00[CHB][hapmap] |
| rs10875946 | 1.00[ASN][1000 genomes] |
| rs10875948 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11168967 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11168970 | 1.00[ASN][1000 genomes] |
| rs11168971 | 1.00[ASN][1000 genomes] |
| rs11168972 | 1.00[ASN][1000 genomes] |
| rs11168975 | 1.00[JPT][hapmap] |
| rs11169016 | 1.00[CHB][hapmap] |
| rs11169048 | 1.00[CHB][hapmap] |
| rs11834161 | 1.00[CHB][hapmap] |
| rs11835037 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11835303 | 1.00[JPT][hapmap] |
| rs12301545 | 1.00[ASN][1000 genomes] |
| rs12301632 | 1.00[CHB][hapmap] |
| rs12304800 | 1.00[ASN][1000 genomes] |
| rs12306118 | 1.00[CHB][hapmap] |
| rs12315095 | 1.00[ASN][1000 genomes] |
| rs12315130 | 1.00[ASN][1000 genomes] |
| rs12315996 | 1.00[CHB][hapmap] |
| rs12317532 | 1.00[ASN][1000 genomes] |
| rs12318618 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs12322335 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12322798 | 1.00[ASN][1000 genomes] |
| rs12580931 | 1.00[JPT][hapmap] |
| rs12581343 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs12581428 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2070761 | 1.00[ASN][1000 genomes] |
| rs2230550 | 0.93[ASN][1000 genomes] |
| rs2236746 | 0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2272478 | 1.00[CHB][hapmap] |
| rs28543370 | 1.00[ASN][1000 genomes] |
| rs28798494 | 1.00[ASN][1000 genomes] |
| rs28823960 | 1.00[ASN][1000 genomes] |
| rs28857010 | 1.00[ASN][1000 genomes] |
| rs3088008 | 1.00[JPT][hapmap] |
| rs34791911 | 1.00[ASN][1000 genomes] |
| rs3847764 | 1.00[CHB][hapmap] |
| rs3898446 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4243545 | 1.00[JPT][hapmap] |
| rs4898516 | 1.00[ASN][1000 genomes] |
| rs4898517 | 1.00[ASN][1000 genomes] |
| rs4898519 | 1.00[JPT][hapmap] |
| rs57451017 | 1.00[ASN][1000 genomes] |
| rs57755392 | 1.00[ASN][1000 genomes] |
| rs60174686 | 0.82[ASN][1000 genomes] |
| rs61023481 | 1.00[ASN][1000 genomes] |
| rs6580707 | 1.00[CHB][hapmap] |
| rs6580709 | 1.00[CHB][hapmap] |
| rs6580716 | 1.00[CHB][hapmap] |
| rs7136538 | 1.00[ASN][1000 genomes] |
| rs7136945 | 1.00[ASN][1000 genomes] |
| rs7139061 | 1.00[CHB][hapmap] |
| rs7294648 | 1.00[CHB][hapmap] |
| rs7294873 | 1.00[ASN][1000 genomes] |
| rs7294973 | 1.00[CHB][hapmap] |
| rs7295162 | 1.00[CHB][hapmap] |
| rs7295247 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7309997 | 1.00[CHB][hapmap] |
| rs7342318 | 0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7342365 | 1.00[CHB][hapmap] |
| rs7342370 | 1.00[ASN][1000 genomes] |
| rs7342384 | 0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7398252 | 1.00[ASN][1000 genomes] |
| rs7398257 | 0.87[ASN][1000 genomes] |
| rs7955541 | 1.00[CHB][hapmap] |
| rs7962951 | 1.00[CHB][hapmap] |
| rs7969099 | 1.00[CHB][hapmap] |
| rs7976165 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TUBA1C | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014