SNP Report
Basic Infomation
| Name | rs3847764 dbSNP |
|---|---|
| Location | chr:12,49678212 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506284 | 1.00[CHB][hapmap] |
| rs10875946 | 0.84[AMR][1000 genomes] |
| rs10875948 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes] |
| rs11168967 | 1.00[CHB][hapmap] |
| rs11168972 | 0.84[AMR][1000 genomes] |
| rs11169016 | 1.00[CHB][hapmap] |
| rs11834161 | 1.00[CHB][hapmap] |
| rs11835037 | 1.00[CHB][hapmap] |
| rs11837234 | 1.00[CHB][hapmap] |
| rs12299403 | 0.82[EUR][1000 genomes] |
| rs12299406 | 0.82[EUR][1000 genomes] |
| rs12301632 | 1.00[CHB][hapmap] |
| rs12306118 | 1.00[CHB][hapmap] |
| rs12306969 | 0.98[ASN][1000 genomes] |
| rs12310595 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12318618 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes] |
| rs12322335 | 1.00[CHB][hapmap] |
| rs12322497 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322501 | 1.00[ASN][1000 genomes] |
| rs12322506 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12580095 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12581343 | 1.00[CHB][hapmap] |
| rs12581428 | 1.00[CHB][hapmap] |
| rs12582651 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12582657 | 1.00[ASN][1000 genomes] |
| rs12582901 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2236746 | 1.00[CHB][hapmap] |
| rs4382953 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4898502 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57755392 | 0.84[AMR][1000 genomes] |
| rs58456199 | 0.85[ASN][1000 genomes] |
| rs60174686 | 0.82[AMR][1000 genomes] |
| rs6580707 | 1.00[CHB][hapmap] |
| rs6580709 | 1.00[CHB][hapmap] |
| rs6580716 | 1.00[CHB][hapmap] |
| rs7139061 | 1.00[CHB][hapmap] |
| rs7294973 | 1.00[CHB][hapmap] |
| rs7295162 | 1.00[CHB][hapmap] |
| rs7295247 | 1.00[CHB][hapmap] |
| rs7309997 | 1.00[CHB][hapmap] |
| rs73307948 | 0.82[EUR][1000 genomes] |
| rs7342318 | 1.00[CHB][hapmap] |
| rs7342365 | 1.00[CHB][hapmap] |
| rs7342384 | 1.00[CHB][hapmap] |
| rs7398252 | 0.82[AMR][1000 genomes] |
| rs7955541 | 1.00[CHB][hapmap] |
| rs7962951 | 1.00[CHB][hapmap] |
| rs7969099 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1QL4 | Distal transcriptional regulation |
| PRPH | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014