SNP Report
Basic Infomation
| Name | rs7295162 dbSNP |
|---|---|
| Location | chr:12,49823119 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 88)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160947 | 0.83[ASN][1000 genomes] |
| rs10161131 | 0.83[ASN][1000 genomes] |
| rs10506284 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10506285 | 1.00[JPT][hapmap] |
| rs10875948 | 1.00[CHB][hapmap] |
| rs11168967 | 1.00[CHB][hapmap] |
| rs11168981 | 1.00[JPT][hapmap] |
| rs11168988 | 1.00[ASN][1000 genomes] |
| rs11169015 | 1.00[ASN][1000 genomes] |
| rs11169016 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11169017 | 1.00[ASN][1000 genomes] |
| rs11169027 | 1.00[ASN][1000 genomes] |
| rs11169048 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs11169058 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs11169059 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs11611743 | 1.00[ASN][1000 genomes] |
| rs11830144 | 1.00[CHD][hapmap] |
| rs11834161 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11835037 | 1.00[CHB][hapmap] |
| rs11837234 | 1.00[CHB][hapmap] |
| rs12296440 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs12299282 | 1.00[ASN][1000 genomes] |
| rs12301632 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12302036 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12305716 | 0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap] |
| rs12306118 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12306212 | 1.00[ASN][1000 genomes] |
| rs12306645 | 1.00[ASN][1000 genomes] |
| rs12306866 | 1.00[JPT][hapmap] |
| rs12309053 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12310129 | 1.00[JPT][hapmap] |
| rs12310836 | 0.84[AMR][1000 genomes] |
| rs12314428 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12315996 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs12316170 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12318618 | 1.00[CHB][hapmap] |
| rs12318633 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12320284 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs12322319 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322335 | 1.00[CHB][hapmap] |
| rs12322561 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap] |
| rs12581343 | 1.00[CHB][hapmap] |
| rs12581428 | 1.00[CHB][hapmap] |
| rs17123696 | 1.00[JPT][hapmap] |
| rs17123751 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17123764 | 1.00[CHD][hapmap] |
| rs17123790 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17197593 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1874910 | 1.00[JPT][hapmap] |
| rs2236746 | 1.00[CHB][hapmap] |
| rs2270741 | 1.00[JPT][hapmap] |
| rs2272478 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs28450055 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3847764 | 1.00[CHB][hapmap] |
| rs4144469 | 1.00[JPT][hapmap] |
| rs57108124 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57601151 | 1.00[ASN][1000 genomes] |
| rs59250459 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61340540 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580707 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6580709 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6580710 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580711 | 1.00[ASN][1000 genomes] |
| rs6580716 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7132684 | 1.00[ASN][1000 genomes] |
| rs7139061 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7294648 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7294973 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7295247 | 1.00[CHB][hapmap] |
| rs7309997 | 0.87[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73295291 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73295300 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297209 | 1.00[ASN][1000 genomes] |
| rs73297210 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297243 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73301240 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7342318 | 1.00[CHB][hapmap] |
| rs7342365 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7342384 | 1.00[CHB][hapmap] |
| rs74089066 | 1.00[ASN][1000 genomes] |
| rs7955541 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7961032 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7962951 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7964718 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7969010 | 0.91[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs7969099 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7976165 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9919740 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPATS2 | Distal transcriptional regulation |
| SPATS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014