SNP Report
Basic Infomation
| Name | rs1874910 dbSNP |
|---|---|
| Location | chr:12,49741908 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506284 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes] |
| rs10506285 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168981 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11169016 | 1.00[JPT][hapmap] |
| rs11169058 | 1.00[JPT][hapmap] |
| rs11169059 | 1.00[JPT][hapmap] |
| rs11831313 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11834161 | 1.00[JPT][hapmap] |
| rs11835071 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12296440 | 1.00[JPT][hapmap] |
| rs12299777 | 0.87[ASN][1000 genomes] |
| rs12301632 | 1.00[JPT][hapmap] |
| rs12305716 | 1.00[JPT][hapmap] |
| rs12306118 | 1.00[JPT][hapmap] |
| rs12306866 | 1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12309053 | 1.00[JPT][hapmap] |
| rs12310129 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12315996 | 1.00[JPT][hapmap] |
| rs12317856 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12322561 | 1.00[JPT][hapmap] |
| rs12581343 | 1.00[CEU][hapmap] |
| rs12581428 | 1.00[CEU][hapmap] |
| rs17123696 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17197593 | 1.00[JPT][hapmap] |
| rs1874909 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1874911 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2270741 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2272478 | 1.00[JPT][hapmap] |
| rs60331259 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60494978 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6580707 | 1.00[JPT][hapmap] |
| rs6580709 | 1.00[JPT][hapmap] |
| rs6580716 | 1.00[JPT][hapmap] |
| rs7139061 | 1.00[JPT][hapmap] |
| rs7294648 | 1.00[JPT][hapmap] |
| rs7294973 | 1.00[JPT][hapmap] |
| rs7295162 | 1.00[JPT][hapmap] |
| rs7309997 | 1.00[JPT][hapmap] |
| rs7342365 | 1.00[JPT][hapmap] |
| rs74089059 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs74089062 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089066 | 0.96[EUR][1000 genomes] |
| rs7955245 | 0.94[ASN][1000 genomes] |
| rs7955541 | 1.00[JPT][hapmap] |
| rs7962951 | 1.00[JPT][hapmap] |
| rs7969099 | 1.00[JPT][hapmap] |
| rs7976165 | 1.00[JPT][hapmap] |
| rs9919740 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC22 | Proximal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| ENSG00000199237 | Distal transcriptional regulation |
| POLR2KP1 | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| PRPH | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| DNAJC22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014