SNP Report

Basic Infomation

Name	rs17123696 dbSNP
Location	chr:12,49748775
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506284	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10506285	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168981	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11169016	1.00[JPT][hapmap]
rs11169058	1.00[JPT][hapmap]
rs11169059	1.00[JPT][hapmap]
rs11831313	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834161	1.00[JPT][hapmap]
rs11835071	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12296440	1.00[JPT][hapmap]
rs12299777	0.81[ASN][1000 genomes]
rs12301632	1.00[JPT][hapmap]
rs12305716	1.00[JPT][hapmap]
rs12306118	1.00[JPT][hapmap]
rs12306866	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12309053	1.00[JPT][hapmap]
rs12310129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12315996	1.00[JPT][hapmap]
rs12317856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322561	1.00[JPT][hapmap]
rs12581343	1.00[CEU][hapmap]
rs12581428	1.00[CEU][hapmap]
rs17123751	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17197593	1.00[JPT][hapmap]
rs1874909	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874911	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2270741	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2272478	1.00[JPT][hapmap]
rs60331259	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60494978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	1.00[JPT][hapmap]
rs6580709	1.00[JPT][hapmap]
rs6580716	1.00[JPT][hapmap]
rs7139061	1.00[JPT][hapmap]
rs7294648	1.00[JPT][hapmap]
rs7294973	1.00[JPT][hapmap]
rs7295162	1.00[JPT][hapmap]
rs7309997	1.00[JPT][hapmap]
rs7342365	1.00[JPT][hapmap]
rs74089059	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74089062	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74089066	1.00[EUR][1000 genomes]
rs7955245	1.00[ASN][1000 genomes]
rs7955541	1.00[JPT][hapmap]
rs7962951	1.00[JPT][hapmap]
rs7969099	1.00[JPT][hapmap]
rs7976165	1.00[JPT][hapmap]
rs9919740	1.00[JPT][hapmap];1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000258101	Distal transcriptional regulation
TUBA1C	Distal transcriptional regulation
DNAJC22	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)