SNP Report
Basic Infomation
| Name | rs74089059 dbSNP |
|---|---|
| Location | chr:12,49740847 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506284 | 0.92[EUR][1000 genomes] |
| rs10506285 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11168981 | 1.00[ASN][1000 genomes] |
| rs11831313 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11835071 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12299777 | 0.94[ASN][1000 genomes] |
| rs12306866 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12310129 | 0.93[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12317856 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17123696 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1874909 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1874910 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1874911 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2270741 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60331259 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60494978 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs74089062 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs74089066 | 0.92[EUR][1000 genomes] |
| rs7955245 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC22 | Proximal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| DNAJC22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014