SNP Report

Basic Infomation

Name	rs17123751 dbSNP
Location	chr:12,49945549
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10506285	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs11169016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11169048	1.00[CHB][hapmap]
rs11169058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11169059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11834161	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12296440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12301632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12305716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12306118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12309053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12310129	1.00[JPT][hapmap]
rs12315996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12322561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17123696	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17123790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123865	1.00[ASW][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs17123919	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17123922	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17197593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17198090	0.85[GIH][hapmap]
rs17198118	0.85[GIH][hapmap]
rs2272478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4144469	1.00[JPT][hapmap]
rs4569075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6580709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6580716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7139061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7294648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7294973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7295162	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7309997	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7342365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7955541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7962951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7969099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7976165	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9919739	0.82[AFR][1000 genomes]
rs9919740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9919807	0.84[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KCNH3	Proximal transcriptional regulation
SPATS2	Distal transcriptional regulation
KCNH3	Distal transcriptional regulation
MCRS1	Distal transcriptional regulation
KCNH3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)