SNP Report

Basic Infomation

Name	rs17123790 dbSNP
Location	chr:12,49961966
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11169016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11169048	1.00[CHB][hapmap]
rs11169058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11169059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11834161	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12296440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12301632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12305716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12306118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12309053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12315996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12322561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17123751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123865	1.00[ASW][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs17123919	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs17123922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs17123943	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs17197593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4144469	1.00[JPT][hapmap]
rs4569075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6580709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6580716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7139061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7294648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7294973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7295162	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7342365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7955541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7962951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7969099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7976165	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9919739	0.83[AMR][1000 genomes]
rs9919740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs9919807	0.83[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRPF40B	Proximal transcriptional regulation
MCRS1	Proximal transcriptional regulation
POLG	Distal transcriptional regulation
ARF3	Distal transcriptional regulation
TUBA1B	Distal transcriptional regulation
ENSG00000258017	Distal transcriptional regulation
TROAP	Distal transcriptional regulation
ENSG00000258334	Distal transcriptional regulation
DNAJC22	Distal transcriptional regulation
SPATS2	Distal transcriptional regulation
BCDIN3D	Distal transcriptional regulation
TMBIM6	Distal transcriptional regulation
PRPF40B	Distal transcriptional regulation
KCNH3	Distal transcriptional regulation
ENSG00000199237	Distal transcriptional regulation
ENSG00000258101	Distal transcriptional regulation
TUBA1C	Distal transcriptional regulation
ENSG00000257964	Distal transcriptional regulation
HIGD1AP9	Distal transcriptional regulation
FAM186B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)