SNP Report
Basic Infomation
| Name | rs4144469 dbSNP |
|---|---|
| Location | chr:12,49961149 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11169016 | 1.00[JPT][hapmap] |
| rs11169058 | 1.00[JPT][hapmap] |
| rs11169059 | 1.00[JPT][hapmap] |
| rs11834161 | 1.00[JPT][hapmap] |
| rs12296440 | 1.00[JPT][hapmap] |
| rs12301632 | 1.00[JPT][hapmap] |
| rs12305716 | 1.00[JPT][hapmap] |
| rs12306118 | 1.00[JPT][hapmap] |
| rs12309053 | 1.00[JPT][hapmap] |
| rs12315996 | 1.00[JPT][hapmap] |
| rs12322561 | 1.00[JPT][hapmap] |
| rs17123751 | 1.00[JPT][hapmap] |
| rs17123790 | 1.00[JPT][hapmap] |
| rs17123919 | 1.00[JPT][hapmap] |
| rs17123922 | 1.00[JPT][hapmap] |
| rs17123943 | 1.00[JPT][hapmap] |
| rs17197593 | 1.00[JPT][hapmap] |
| rs2272478 | 1.00[JPT][hapmap] |
| rs4569075 | 1.00[JPT][hapmap] |
| rs6580707 | 1.00[JPT][hapmap] |
| rs6580709 | 1.00[JPT][hapmap] |
| rs6580716 | 1.00[JPT][hapmap] |
| rs7139061 | 1.00[JPT][hapmap] |
| rs7294648 | 1.00[JPT][hapmap] |
| rs7294973 | 1.00[JPT][hapmap] |
| rs7295162 | 1.00[JPT][hapmap] |
| rs7342365 | 1.00[JPT][hapmap] |
| rs7955541 | 1.00[JPT][hapmap] |
| rs7962951 | 1.00[JPT][hapmap] |
| rs7969099 | 1.00[JPT][hapmap] |
| rs7976165 | 1.00[JPT][hapmap] |
| rs9919740 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| MCRS1 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
| ENSG00000258017 | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| KCNH3 | Distal transcriptional regulation |
| ENSG00000199237 | Distal transcriptional regulation |
| ENSG00000258232 | Distal transcriptional regulation |
| ENSG00000257964 | Distal transcriptional regulation |
| HIGD1AP9 | Distal transcriptional regulation |
| FAM186B | Distal transcriptional regulation |
| MCRS1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014