SNP Report
Basic Infomation
| Name | rs11830144 dbSNP |
|---|---|
| Location | chr:12,49709867 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168971 | 0.84[EUR][1000 genomes] |
| rs11169016 | 1.00[CHD][hapmap] |
| rs11169048 | 1.00[CHD][hapmap] |
| rs11834161 | 1.00[CHD][hapmap] |
| rs12301632 | 1.00[CHD][hapmap] |
| rs12305716 | 1.00[CHD][hapmap] |
| rs12306118 | 1.00[CHD][hapmap] |
| rs12315996 | 1.00[CHD][hapmap] |
| rs12318618 | 0.81[TSI][hapmap] |
| rs12322561 | 1.00[CHD][hapmap] |
| rs2272478 | 1.00[CHD][hapmap] |
| rs6580707 | 1.00[CHD][hapmap] |
| rs6580709 | 1.00[CHD][hapmap] |
| rs6580716 | 1.00[CHD][hapmap] |
| rs7294648 | 1.00[CHD][hapmap] |
| rs7294973 | 1.00[CHD][hapmap] |
| rs7295162 | 1.00[CHD][hapmap] |
| rs73309973 | 0.89[AMR][1000 genomes] |
| rs7397166 | 0.85[AMR][1000 genomes] |
| rs7955541 | 1.00[CHD][hapmap] |
| rs7962951 | 1.00[CHD][hapmap] |
| rs7969099 | 1.00[CHD][hapmap] |
| rs7976165 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TROAP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014