SNP Report
Basic Infomation
| Name | rs17123764 dbSNP |
|---|---|
| Location | chr:12,49947952 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 80)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012874 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10506287 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10506288 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169016 | 1.00[CHD][hapmap] |
| rs11169048 | 1.00[CHD][hapmap] |
| rs11169058 | 1.00[CHD][hapmap] |
| rs11169059 | 1.00[CHD][hapmap] |
| rs11169126 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169143 | 1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169145 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11830696 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11834161 | 1.00[CHD][hapmap] |
| rs11836837 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11837639 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12296440 | 1.00[CHD][hapmap] |
| rs12301632 | 1.00[CHD][hapmap] |
| rs12305716 | 1.00[CHD][hapmap] |
| rs12306118 | 1.00[CHD][hapmap] |
| rs12306422 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306430 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306481 | 1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12307828 | 1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12313353 | 1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12313354 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12315524 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12315996 | 1.00[CHD][hapmap] |
| rs12317778 | 1.00[ASN][1000 genomes] |
| rs12322561 | 1.00[CHD][hapmap] |
| rs1317131 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17123927 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17123970 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1993398 | 1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2272478 | 1.00[CHD][hapmap] |
| rs2303305 | 1.00[ASW][hapmap];0.87[TSI][hapmap] |
| rs2336447 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4641552 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55637397 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56737983 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56743994 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56906356 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56945609 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57291131 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58756176 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59261129 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60094911 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60126713 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60415769 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60613973 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61281663 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580707 | 1.00[CHD][hapmap] |
| rs6580709 | 1.00[CHD][hapmap] |
| rs6580716 | 1.00[CHD][hapmap] |
| rs7294648 | 1.00[CHD][hapmap] |
| rs7294973 | 1.00[CHD][hapmap] |
| rs7295162 | 1.00[CHD][hapmap] |
| rs7298080 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74086911 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74087113 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74087134 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74087188 | 0.87[ASN][1000 genomes] |
| rs74089557 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs74089564 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089566 | 0.98[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089570 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74089573 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7487779 | 0.80[EUR][1000 genomes] |
| rs7487854 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7953412 | 1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7955541 | 1.00[CHD][hapmap] |
| rs7962951 | 1.00[CHD][hapmap] |
| rs7964320 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7967073 | 0.87[ASN][1000 genomes] |
| rs7968302 | 1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969099 | 1.00[CHD][hapmap] |
| rs7970674 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7971176 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7971369 | 1.00[ASN][1000 genomes] |
| rs7973498 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7976165 | 1.00[CHD][hapmap] |
| rs9805063 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNH3 | Proximal transcriptional regulation |
| KCNH3 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| KCNH3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014