SNP Report
Basic Infomation
| Name | rs4898502 dbSNP |
|---|---|
| Location | chr:12,49681976 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10400435 | 0.91[CEU][hapmap];0.82[MEX][hapmap] |
| rs10875948 | 1.00[CEU][hapmap] |
| rs11835303 | 1.00[CEU][hapmap] |
| rs12306969 | 0.98[ASN][1000 genomes] |
| rs12310595 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12318618 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs12322497 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322501 | 1.00[ASN][1000 genomes] |
| rs12322506 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12322783 | 0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs12580095 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12582651 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12582657 | 1.00[ASN][1000 genomes] |
| rs12582901 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12822293 | 1.00[CEU][hapmap];0.80[MEX][hapmap] |
| rs17123627 | 0.82[CHB][hapmap] |
| rs3088008 | 1.00[CEU][hapmap];0.80[MEX][hapmap] |
| rs3847764 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4243545 | 0.91[CEU][hapmap] |
| rs4382953 | 0.83[CEU][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4898519 | 0.91[CEU][hapmap] |
| rs58456199 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPH | Distal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| ENSG00000258232 | Distal transcriptional regulation |
| TUBA1A | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014