SNP Report
Basic Infomation
| Name | rs12322783 dbSNP |
|---|---|
| Location | chr:12,49678529 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168967 | 0.86[MEX][hapmap] |
| rs11168973 | 0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11835037 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs12315095 | 0.81[EUR][1000 genomes] |
| rs12315130 | 0.81[EUR][1000 genomes] |
| rs12322335 | 0.93[CEU][hapmap];0.93[MEX][hapmap] |
| rs12580931 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2070760 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2236746 | 0.93[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs28493849 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs28691217 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4898502 | 0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs4898515 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61023481 | 0.81[EUR][1000 genomes] |
| rs67309388 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs68030039 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7136538 | 0.81[EUR][1000 genomes] |
| rs7294873 | 0.81[EUR][1000 genomes] |
| rs7295247 | 0.93[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs73112143 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7342318 | 0.93[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs7342384 | 0.93[CEU][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258232 | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| PRPH | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014