SNP Report
Basic Infomation
| Name | rs11168973 dbSNP |
|---|---|
| Location | chr:12,49710572 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10400435 | 0.89[ASN][1000 genomes] |
| rs10400567 | 0.89[ASN][1000 genomes] |
| rs11168970 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11168974 | 0.96[ASN][1000 genomes] |
| rs11168975 | 0.96[ASN][1000 genomes] |
| rs11835037 | 0.88[CEU][hapmap] |
| rs11835303 | 0.93[ASN][1000 genomes] |
| rs12304800 | 0.81[AMR][1000 genomes] |
| rs12322335 | 0.93[CEU][hapmap] |
| rs12322783 | 0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12322798 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12580931 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12822293 | 0.89[ASN][1000 genomes] |
| rs2070760 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2236746 | 0.93[CEU][hapmap] |
| rs28493849 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28691217 | 0.85[AMR][1000 genomes] |
| rs3088008 | 0.93[ASN][1000 genomes] |
| rs4243545 | 0.93[ASN][1000 genomes] |
| rs4898504 | 1.00[ASN][1000 genomes] |
| rs4898515 | 0.88[AMR][1000 genomes] |
| rs4898519 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57241318 | 0.96[ASN][1000 genomes] |
| rs59575791 | 0.93[ASN][1000 genomes] |
| rs67309388 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs68030039 | 0.83[AMR][1000 genomes] |
| rs7295247 | 0.93[CEU][hapmap] |
| rs73112143 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73309977 | 0.93[ASN][1000 genomes] |
| rs7342318 | 0.93[CEU][hapmap] |
| rs7342384 | 0.93[CEU][hapmap] |
| rs7488343 | 0.96[ASN][1000 genomes] |
| rs7976060 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TROAP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014